Stem-loop sequence bmo-mir-3001

Accession

MI0013861 (change log)

Description

Bombyx mori miR-3001 stem-loop

Literature search

1 open access papers mention bmo-mir-3001
(1 sentences)

Stem-loop

   guaugugauuca    -   uu   u        uu   --       auuccg   ucg 
5'             gaug cgu  aag ugaaagaa  gua  gauuuug      uuu   c
               |||| |||  ||| ||||||||  |||  |||||||      |||    
3'             cuac gcg  uuc guuuucuu  uau  uuaagac      aaa   c
   cgauuaccggaa    u   gu   u        uu   ag       gacuua   uaa 

Deep sequencing

381 reads, 33.3 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (ASM15162v1; GCA_000151625.1)	Overlapping transcripts
NW_004581686.1: 3139673-3139791 [-]	intergenic
NW_004581704.1: 291415-291533 [+]	intergenic
NW_004582013.1: 3144852-3144970 [+]	intergenic
NW_004614790.1: 197-315 [+]	intergenic
NW_004619725.1: 650-768 [-]	intergenic

Database links

• miRBase Tracker:MI0013861

Mature sequence bmo-miR-3001

• Accession: MIMAT0014665
• Sequence: 21 - uaaguugaaagaauuguagauuuuga - 46
• Deep sequencing: 99 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003D2E2D_7091

References

1. PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).