Stem-loop sequence bmo-mir-2778a-4

Accession

MI0012353 (change log)

Description

Bombyx mori miR-2778a-4 stem-loop

Gene family

MIPF0000827; mir-2778

Stem-loop

   --    g     --   a      a  uc    ac  uuu 
5'   cacg caaaa  guu uuuugc ua  cugc  ag   c
     |||| |||||  ||| |||||| ||  ||||  ||    
3'   gugc guuuu  caa aaaacg au  gacg  uc   a
   ga    a     aa   a      c  ga    -c  uug 

Deep sequencing

25935 reads, 4.37e+03 reads per million, 3 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004607897.1: 520-596 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2778a-4

• bmo-mir-2778a-4: NW_004607897.1: 520-596 [-]
• bmo-mir-2778a-2: NW_004607897.1: 369-448 [-]
• bmo-mir-2778b: NW_004607897.1: 218-294 [-]
• bmo-mir-2778a-1: NW_004607897.1: 67-143 [-]

Database links

• miRBase Tracker:MI0012353

Mature sequence bmo-miR-2778a-4-5p

• Accession: MIMAT0015306
• Previous IDs: bmo-miR-2778a-4*
• Sequence: 11 - guuauuuugcauauccugca - 30
• Deep sequencing: 1412 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000045E352_7091

Mature sequence bmo-miR-2778a-3p

• Accession: MIMAT0013665
• Previous IDs: bmo-miR-2778a
• Sequence: 46 - cagaguacgcaaaaaaacaauu - 67
• Deep sequencing: 98079 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075C26B_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).