miRBase entry: bmo-mir-2778a-4

Stem-loop bmo-mir-2778a-4


Accession
MI0012353
Description
Bombyx mori bmo-mir-2778a-4 precursor miRNA
Gene family
MIPF0000827; mir-2778


Sequence

21782 reads, 4034 reads per million, 3 experiments
cacggcaaaaGUUAUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUACGCAAAAAAACAAUUuugacgugag
((((.((((((((.((((((.(((.((((..((........)).)))).))).)))))).)))..))))).))))..

Structure
--    g     --   A      A   C    Ac  uuu 
  cacg caaaa  GUU UUUUGC UAU CUGC  ag   c
  |||| |||||  ||| |||||| ||| ||||  ||    
  gugc guuUU  CAA AAAACG AUG GACg  uc   a
ga    a     AA   A      C   A    -c  uug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
NW_004607897.1: 520-596 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2778a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2778a-3p

Accession MIMAT0013665
Description Bombyx mori bmo-miR-2778a-3p mature miRNA
Sequence 46 - CAGAGUACGCAAAAAAACAAUU - 67
Evidence experimental
Illumina [1]
Database links

Mature bmo-miR-2778a-4-5p

Accession MIMAT0015306
Description Bombyx mori bmo-miR-2778a-4-5p mature miRNA
Sequence 11 - GUUAUUUUGCAUAUCCUGCA - 30
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148