Stem-loop sequence bmo-mir-2778a-2

Accession

MI0012352 (change log)

Description

Bombyx mori miR-2778a-2 stem-loop

Gene family

MIPF0000827; mir-2778

Stem-loop

   a      g     --         ua  uc    ac  uuu 
5'  cucacg caaaa  guuuuuuug  ua  cugc  ag   c
    |||||| |||||  |||||||||  ||  ||||  ||    
3'  gagugc guuuu  caaaaaaac  au  gacg  uc   a
   -      a     aa         gc  ga    -c  uug 

Deep sequencing

25903 reads, 4.37e+03 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (ASM15162v1; GCA_000151625.1)	Overlapping transcripts
NW_004607716.1: 365-444 [-]	intergenic
NW_004607897.1: 369-448 [-]	intergenic

Clustered miRNAs

< 10kb from bmo-mir-2778a-2

• bmo-mir-2778a-1: NW_004607716.1: 516-592 [-]
• bmo-mir-2778a-2: NW_004607716.1: 365-444 [-]
• bmo-mir-2778a-1: NW_004607716.1: 214-290 [-]
• bmo-mir-2778a-1: NW_004607716.1: 63-139 [-]

Database links

• miRBase Tracker:MI0012352

Mature sequence bmo-miR-2778a-2-5p

• Accession: MIMAT0015305
• Previous IDs: bmo-miR-2778a-2*
• Sequence: 14 - guuuuuuuguauauccugc - 32
• Deep sequencing: 1380 reads, 3 experiments
• Evidence: experimental; Illumina [1]

Mature sequence bmo-miR-2778a-3p

• Accession: MIMAT0013665
• Previous IDs: bmo-miR-2778a
• Sequence: 49 - cagaguacgcaaaaaaacaauu - 70
• Deep sequencing: 98079 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075C26B_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).