miRBase entry: bmo-mir-2778a-1

Stem-loop bmo-mir-2778a-1


Accession
MI0012338
Description
Bombyx mori bmo-mir-2778a-1 precursor miRNA
Gene family
MIPF0000827; mir-2778


Sequence

23127 reads, 4271 reads per million, 3 experiments
cacggcaaaaGUUUUUUUGCAUAUCCUGCAcaguuucaguucucgCAGAGUACGCAAAAAAACAAUUuugacgugag
((((.(((((((((((((((.(((.((((..((........)).)))).))).))))))))))..))))).))))..

Structure
--    g     --          A   C    Ac  uuu 
  cacg caaaa  GUUUUUUUGC UAU CUGC  ag   c
  |||| |||||  |||||||||| ||| ||||  ||    
  gugc guuUU  CAAAAAAACG AUG GACg  uc   a
ga    a     AA          C   A    -c  uug 


Annotation confidence High
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Genome context
NW_004581697.1: 2278993-2279069 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bmo-mir-2778a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2778a-5p

Accession MIMAT0013664
Description Bombyx mori bmo-miR-2778a-5p mature miRNA
Sequence 11 - GUUUUUUUGCAUAUCCUGCA - 30
Evidence experimental
Illumina [1]

Mature bmo-miR-2778a-3p

Accession MIMAT0013665
Description Bombyx mori bmo-miR-2778a-3p mature miRNA
Sequence 46 - CAGAGUACGCAAAAAAACAAUU - 67
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148