miRBase entry: bmo-mir-9d

Stem-loop bmo-mir-9d


Accession
MI0012307
Description
Bombyx mori bmo-mir-9d precursor miRNA

Literature search
4 open access papers mention bmo-mir-9d
(9 sentences)

Sequence

11 reads, 2 reads per million, 2 experiments
gcucaauuggaguauuuggugauucagcugaugugaugaaaacuuuuuaauucAUAAAGCUAAUUCACUGAGUGUucgaguugag
.(((((((.(((((((((((((...((((..((((((((((...)))))..))))).))))...))))))))))))).)))))))

Structure
g       g             uuc    ga     --     a 
 cucaauu gaguauuugguga   agcu  uguga  ugaaa  
 ||||||| |||||||||||||   ||||  |||||  ||||| c
 gaguuga cuUGUGAGUCACU   UCGA  AUAcu  auuuu  
-       g             UAA    -A     ua     u 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 354559-354643 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from bmo-mir-9d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-9d

Accession MIMAT0013620
Description Bombyx mori bmo-miR-9d mature miRNA
Sequence 54 - AUAAAGCUAAUUCACUGAGUGU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148