Stem-loop sequence bmo-mir-9d

Accession

MI0012307 (change log)

Description

Bombyx mori miR-9d stem-loop

Literature search

4 open access papers mention bmo-mir-9d
(9 sentences)

Stem-loop

   g       g       ug    uuc    ga     -ug   a 
5'  cucaauu gaguauu  guga   agcu  uguga   aaa c
    ||||||| |||||||  ||||   ||||  |||||   |||  
3'  gaguuga cuuguga  cacu   ucga  auacu   uuu u
   -       g       gu    uaa    -a     uaa   u 

Deep sequencing

15 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581684.1: 354559-354643 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-9d

• bmo-mir-9d: NW_004581684.1: 354559-354643 [-]
• bmo-mir-2733c: NW_004581684.1: 353724-353805 [-]
• bmo-mir-2733g: NW_004581684.1: 347847-347958 [-]
• bmo-mir-2733a-1: NW_004581684.1: 347677-347760 [-]
• bmo-mir-2851-1: NW_004581684.1: 347670-347768 [+]
• bmo-mir-2733b-2: NW_004581684.1: 347220-347348 [-]
• bmo-mir-2733h: NW_004581684.1: 347062-347142 [-]
• bmo-mir-2733b-1: NW_004581684.1: 346939-347018 [-]
• bmo-mir-2733a-3: NW_004581684.1: 346598-346745 [-]
• bmo-mir-2851-2: NW_004581684.1: 346562-346660 [+]
• bmo-mir-2733a-2: NW_004581684.1: 346489-346605 [-]
• bmo-mir-2733f: NW_004581684.1: 346080-346197 [-]
• bmo-mir-2733i: NW_004581684.1: 344891-344998 [-]

Database links

• miRBase Tracker:MI0012307

Mature sequence bmo-miR-9d

• Accession: MIMAT0013620
• Sequence: 54 - auaaagcuaauucacugagugu - 75
• Deep sequencing: 12 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).