miRBase entry: bmo-mir-279b

Stem-loop bmo-mir-279b


Accession
MI0012298
Description
Bombyx mori bmo-mir-279b precursor miRNA
Gene family
MIPF0000184; mir-279

Literature search
8 open access papers mention bmo-mir-279b
(13 sentences)

Sequence

29954 reads, 5250 reads per million, 3 experiments
uuuguaguuaAUGGGUAUAGGUCUAGUAUcaccgggcugauucugUGACUAGAUCUACACUCAUUGAgugcuuaugg
...(((.(((((((((.(((((((((..((((.((......)).))))))))))))).))))))))).)))......

Structure
---uuu   g         A         UA    c  gc 
      gua uuaAUGGGU UAGGUCUAG  Ucac gg  u
      ||| ||||||||| |||||||||  |||| ||   
      cgu AGUUACUCA AUCUAGAUC  AGUg cu  g
gguauu   g         C         --    u  ua 


Annotation confidence High
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Genome context
NW_004581681.1: 2936576-2936652 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-279b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-279b-5p

Accession MIMAT0013608
Description Bombyx mori bmo-miR-279b-5p mature miRNA
Sequence 11 - AUGGGUAUAGGUCUAGUAU - 29
Evidence experimental
Illumina [1]
Database links

Mature bmo-miR-279b-3p

Accession MIMAT0013609
Description Bombyx mori bmo-miR-279b-3p mature miRNA
Sequence 46 - UGACUAGAUCUACACUCAUUGA - 67
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148