miRBase entry: bmo-mir-100

Stem-loop bmo-mir-100


Accession
MI0012291
Description
Bombyx mori bmo-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
9 open access papers mention bmo-mir-100
(17 sentences)

Sequence

87058 reads, 16771 reads per million, 3 experiments
cauuaagccucuuuaacuggAACCCGUAGAUCCGAACUUGUGcgcuauugucguuggggacuccguccaaucgcgcguaacgauagcgacuauucaauggcaacaauaucgauucuaaaaguugccggcaaucaaaaccaaa
................(((((((...((((..(((..((((..(((((((....(((((((...))))..((((...........)))))))..))))))).))))..)))..))))...))).))))..............

Structure
cauuaagccucuuuaa    -   CCG    UC   AC    Gc       ucgu   ---------------------    u 
                cugg AAC   UAGA  CGA  UUGU  gcuauug    ugg                     ggac  
                |||| |||   ||||  |||  ||||  |||||||    |||                     |||| c
                ggcc uug   aucu  gcu  aaca  cgguaac    auc                     ccug  
--aaaccaaaacuaac    g   aaa    ua   au    -a       --uu   agcgauagcaaugcgcgcuaa    c 


Annotation confidence Not enough data
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Genome context
NW_004582019.1: 3376172-3376313 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bmo-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-100

Accession MIMAT0013596
Description Bombyx mori bmo-miR-100 mature miRNA
Sequence 21 - AACCCGUAGAUCCGAACUUGUG - 42
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148