miRBase entry: bmo-mir-989a

Stem-loop bmo-mir-989a


Accession
MI0012205
Description
Bombyx mori bmo-mir-989a precursor miRNA
Gene family
MIPF0000885; mir-989

Literature search
3 open access papers mention bmo-mir-989a
(4 sentences)

Sequence

288 reads, 59 reads per million, 3 experiments
gguucaggguugaaauggccauuaccucacagucacguggucaugaugguacaacGUGUGAUGUGACGUAGUGGAAgucucgaccuggaua
.(((((((.((((.((..(((((((.(((((..((((((..(......)..).)))))...))))).)))))))..)).))))))))))).

Structure
g       g    a  gg       c     -gu     - gu au 
 guucagg uuga au  ccauuac ucaca   cacgu g  c  g
 ||||||| |||| ||  ||||||| |||||   ||||| |  |   
 uaggucc agcu ug  GGUGAUG AGUGU   GUGca c  g  a
a       -    c  AA       C     AGU     a au gu 


Annotation confidence Not enough data
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Genome context
NW_004582008.1: 14748776-14748866 [-]

Database links

Mature bmo-miR-989a

Accession MIMAT0012633
Description Bombyx mori bmo-miR-989a mature miRNA
Sequence 56 - GUGUGAUGUGACGUAGUGGAA - 76
Evidence experimental
cloned [1], Illumina [2], RTPCR [3]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444

  3. PubMed ID: 19823945
    Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)
    "Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ"
    "Mol Biol Rep (2010) 37:3171-3176