Stem-loop sequence bmo-mir-2745

Accession

MI0012196 (change log)

Description

Bombyx mori miR-2745 stem-loop

Stem-loop

   a     g      -        uu        u   uuu 
5'  gugcc uugaug gcccgaaa  ccgaauuu agc   a
    ||||| |||||| ||||||||  |||||||| |||   u
3'  cacgg aacuau cgggcuuu  ggcuuaaa ucg   u
   c     a      a        cu        -   uaa 

Deep sequencing

7013 reads, 1.17e+03 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582030.1: 2421486-2421564 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-2745

• bmo-mir-2760: NW_004582030.1: 2421649-2421739 [-]
• bmo-mir-2745: NW_004582030.1: 2421486-2421564 [-]

Database links

• miRBase Tracker:MI0012196

Mature sequence bmo-miR-2745

• Accession: MIMAT0012624
• Sequence: 47 - uaaauucggucuuucgggc - 65
• Deep sequencing: 7006 reads, 3 experiments
• Evidence: experimental; cloned [1], RT-PCR [1], SOLID [2]
• Database links:
  • RNAcentral:URS00004326EB_7091

References

1. PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).
2. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).