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miRBase |
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Stem-loop sequence bmo-mir-9c |
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Accession | MI0012193 (change log) | |||||||||||
Description | Bombyx mori miR-9c stem-loop | |||||||||||
Gene family | MIPF0000014; mir-9 | |||||||||||
Literature search |
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5 open access papers mention bmo-mir-9c | |||||||||||
Stem-loop |
ca - - c -gg cu c g c g 5' gcg cg c ga gucgcgggccgu cuuugguauc uagcu uagg gu c ||| || | || |||||||||||| |||||||||| ||||| |||| || g 3' ugc gc g cu cagugcucggca gaagccaugg auuga aucc cg c -c a u a aug uu u a - g |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence bmo-miR-9c-5p |
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Accession | MIMAT0015302 |
Previous IDs | bmo-miR-9c* |
Sequence |
27 - ucuuugguauccuagcug - 44 |
Deep sequencing | 12546 reads, 3 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence bmo-miR-9c-3p |
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Accession | MIMAT0012621 |
Previous IDs | bmo-miR-9c |
Sequence |
61 - uaaaguuaugguaccgaaguua - 82 |
Deep sequencing | 10182 reads, 3 experiments |
Evidence | experimental; cloned [1], RT-PCR [1], Illumina [2] |
Database links |
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References |
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1 |
PMID:19699294
"A discovery of novel microRNAs in the silkworm (Bombyx mori) genome"
Genomics. 94:438-444(2009).
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2 |
PMID:20199675
"MicroRNAs of Bombyx mori identified by Solexa sequencing"
BMC Genomics. 11:148(2010).
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