Stem-loop sequence bmo-mir-9c

Accession

MI0012193 (change log)

Description

Bombyx mori miR-9c stem-loop

Gene family

MIPF0000014; mir-9

Literature search

5 open access papers mention bmo-mir-9c
(17 sentences)

Stem-loop

   ca   -  - c  -gg            cu          c     g    c  g 
5'   gcg cg c ga   gucgcgggccgu  cuuugguauc uagcu uagg gu c
     ||| || | ||   ||||||||||||  |||||||||| ||||| |||| || g
3'   ugc gc g cu   cagugcucggca  gaagccaugg auuga aucc cg c
   -c   a  u a  aug            uu          u     a    -  g 

Deep sequencing

22750 reads, 3.93e+03 reads per million, 3 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004581774.1: 28981-29088 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bmo-mir-9c

• bmo-mir-9c: NW_004581774.1: 28981-29088 [+]
• bmo-mir-306a: NW_004581774.1: 30978-31085 [+]
• bmo-mir-306b: NW_004581774.1: 30994-31069 [-]
• bmo-mir-79: NW_004581774.1: 31444-31543 [+]
• bmo-mir-9b: NW_004581774.1: 31448-31537 [-]

Database links

• miRBase Tracker:MI0012193

Mature sequence bmo-miR-9c-5p

• Accession: MIMAT0015302
• Previous IDs: bmo-miR-9c*
• Sequence: 27 - ucuuugguauccuagcug - 44
• Deep sequencing: 12546 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002ECD89_7091

Mature sequence bmo-miR-9c-3p

• Accession: MIMAT0012621
• Previous IDs: bmo-miR-9c
• Sequence: 61 - uaaaguuaugguaccgaaguua - 82
• Deep sequencing: 10182 reads, 3 experiments
• Evidence: experimental; cloned [1], RT-PCR [1], Illumina [2]
• Database links:
  • RNAcentral:URS00004620AB_7091

References

1. PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).