miRBase entry: bmo-mir-iab-4

Stem-loop bmo-mir-iab-4


Accession
MI0010005
Description
Bombyx mori bmo-mir-iab-4 precursor miRNA
Gene family
MIPF0000151; mir-iab-4


Sequence

608 reads, 101 reads per million, 3 experiments
gcgucgccuucuguACGUAUACUGAAUGUAUCCUGAgugcgcgauucuugucCGGUAUACCUUCAGUAUACGUAACagaagaugacac
..((((.(((((((((((((((((((.((((((.((..............)).)).)))).)))))))))))).))))))).))))..

Structure
gc    c       -            U    -  U  gugcgc 
  gucg cuucugu ACGUAUACUGAA GUAU CC GA      g
  |||| ||||||| |||||||||||| |||| || ||       
  cagu gaagaCA UGCAUAUGACUU CAUA GG cu      a
ca    a       A            C    U  C  guucuu 


Annotation confidence High
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Genome context
NW_004582018.1: 3486590-3486677 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-iab-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-iab-4-5p

Accession MIMAT0009162
Description Bombyx mori bmo-miR-iab-4-5p mature miRNA
Sequence 15 - ACGUAUACUGAAUGUAUCCUGA - 36
Evidence experimental
Illumina [2]
Database links

Mature bmo-miR-iab-4-3p

Accession MIMAT0009163
Description Bombyx mori bmo-miR-iab-4-3p mature miRNA
Sequence 53 - CGGUAUACCUUCAGUAUACGUAAC - 76
Evidence experimental
cloned [1], Illumina [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997