miRBase entry: bmo-mir-9b

Stem-loop bmo-mir-9b


Accession
MI0010004
Description
Bombyx mori bmo-mir-9b precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
5 open access papers mention bmo-mir-9b
(19 sentences)

Sequence

4231 reads, 2 reads per million, 3 experiments
gacggcgcgacgcgauGCUUUGGUAAUCUAGCUUUAUGAacggaaugaugucACGGAGCUAAAUCGCCAAAGCGucgcagcgcgcccggc
...((((((..(((((((((((((.((.(((((((.(((.((......))))).))))))).)).)))))))))))))..))))))....

Structure
-gac      ac             A  C       A   a  ga 
    ggcgcg  gcgauGCUUUGGU AU UAGCUUU UGA cg  a
    ||||||  ||||||||||||| || ||||||| ||| ||   
    ccgcgc  cgcuGCGAAACCG UA AUCGAGG Acu gu  u
cggc      ga             C  A       C   -  ag 


Annotation confidence Not enough data
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Genome context
NW_004581774.1: 31448-31537 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from bmo-mir-9b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-9b-5p

Accession MIMAT0009161
Description Bombyx mori bmo-miR-9b-5p mature miRNA
Sequence 17 - GCUUUGGUAAUCUAGCUUUAUGA - 39
Evidence experimental
Illumina [2]

Mature bmo-miR-9b-3p

Accession MIMAT0015290
Description Bombyx mori bmo-miR-9b-3p mature miRNA
Sequence 53 - ACGGAGCUAAAUCGCCAAAGCG - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997