miRBase entry: bmo-mir-927

Stem-loop bmo-mir-927


Accession
MI0010000
Description
Bombyx mori bmo-mir-927 precursor miRNA
Gene family
MIPF0000452; mir-927

Literature search
1 open access papers mention bmo-mir-927
(3 sentences)

Sequence

299 reads, 56 reads per million, 3 experiments
ugcagccuuuuugcUUUAGAAUUCCUACGCUUUACCguugccaaguaguugggCAAAGCGUUUGGAUUCUAAaacgaaauaacugcca
.((((...(((((.((((((((((..(((((((.((...((......))..)).)))))))..)))))))))).)))))...))))..

Structure
-u    ccu     c          CU       A  guu  ca 
  gcag   uuuug UUUAGAAUUC  ACGCUUU CC   gc  a
  ||||   ||||| ||||||||||  ||||||| ||   ||   
  cguc   aaagc aAAUCUUAGG  UGCGAAA gg   ug  g
ac    aau     a          UU       C  -gu  au 


Annotation confidence High
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Genome context
NW_004581679.1: 1013971-1014058 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-927
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-927-5p

Accession MIMAT0009157
Description Bombyx mori bmo-miR-927-5p mature miRNA
Sequence 15 - UUUAGAAUUCCUACGCUUUACC - 36
Evidence experimental
Illumina [2]
Database links

Mature bmo-miR-927-3p

Accession MIMAT0015288
Description Bombyx mori bmo-miR-927-3p mature miRNA
Sequence 54 - CAAAGCGUUUGGAUUCUAA - 72
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997