Stem-loop sequence dre-mir-152

AccessionMI0002017 (change log)
Previous IDsdre-mir-152-1
DescriptionDanio rerio miR-152 stem-loop
Gene family MIPF0000056; mir-148
Literature search

4 open access papers mention dre-mir-152
(5 sentences)

Stem-loop 
   cuguuca  u    c         g  a    ca    uugaa 
5'        cc ggcu aaguucugu au cacu  gacu     u
          || |||| ||||||||| || ||||  ||||     c
3'        gg ccgg uucaagaca ua guga  cuga     a
   -------  c    u         g  c    --    uggug
Get sequence
Deep sequencing
14001 reads, 827 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr3: 24095957-24096036 [+]
sense
OTTDART00000024534 ; copz2-001; intron 1
OTTDART00000024535 ; copz2-002; intron 1
OTTDART00000024536 ; copz2-003; intron 1
ENSDART00000138270 ; copz2-001; intron 1
ENSDART00000131509 ; copz2-002; intron 1
ENSDART00000139181 ; copz2-003; intron 1
ENSDART00000002177 ; copz2-201; intron 2
KZ115068.1: 105256-105335 [+]
sense
OTTDART00000024534 ; copz2-001; intron 1
OTTDART00000024535 ; copz2-002; intron 1
OTTDART00000024536 ; copz2-003; intron 1
ENSDART00000138270 ; copz2-001; intron 1
ENSDART00000131509 ; copz2-002; intron 1
ENSDART00000139181 ; copz2-003; intron 1
ENSDART00000002177 ; copz2-201; intron 2
Database links

Mature sequence dre-miR-152

Accession MIMAT0001847
Sequence

54 -  

ucagugcaugacagaacuuugg

 - 75

Get sequence
Deep sequencing9897 reads, 11 experiments
Evidence by similarity; MI0000174
Database links
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).