Stem-loop dre-mir-148

Accession

MI0002015

Description

Danio rerio dre-mir-148 precursor miRNA

Gene family

MIPF0000056; mir-148

Literature search

3 open access papers mention dre-mir-148
(3 sentences)

Sequence

5180 reads, 553 reads per million, 9 experiments

cuuuccaaguaaaguucugugauacacuccgacucugaauguuugcagUCAGUGCAUUACAGAACUUUGUuuugggagu
.((((((((.(((((((((((((.((((..(((((.........).)))))))).)))))))))))))..)))))))).

Structure

c        -u             a    cc    - uga 
 uuuccaag  aaaguucugugau cacu  gacu c   a
 ||||||||  ||||||||||||| ||||  |||| |   u
 gaggguuu  UUUCAAGACAUUA GUGA  CUga g   g
u        UG             C    --    c uuu 

Annotation confidence High

Genome context

chr9: 1644683-1644761 [-]

Mature dre-miR-148

• Accession: MIMAT0001845
• Description: Danio rerio dre-miR-148 mature miRNA
• Sequence: 49 - UCAGUGCAUUACAGAACUUUGU - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293