miRBase entry: dre-mir-93

Stem-loop dre-mir-93


Accession
MI0001954
Description
Danio rerio dre-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

39864 reads, 1548 reads per million, 11 experiments
guguguguuAAAAGUGCUGUUUGUGCAGGUAguguguuuccucuacuguaggagcagcacuucacaacacacac
(((((((((..(((((((((((.(((((.(((.(......).)))))))).)))))))))))...)))))))))

Structure
         -AA           G     G   u ug 
guguguguu   AAGUGCUGUUU UGCAG UAg g  u
|||||||||   ||||||||||| ||||| ||| |   
cacacacaa   uucacgacgag auguc auc c  u
         cac           g     -   u cu 


Annotation confidence High
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Genome context
chr14: 100502-100575 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-93

Accession MIMAT0001810
Description Danio rerio dre-miR-93 mature miRNA
Sequence 10 - AAAAGUGCUGUUUGUGCAGGUA - 31
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293