Stem-loop dre-mir-16c

Accession

MI0001896

Description

Danio rerio dre-mir-16c precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

10 open access papers mention dre-mir-16c
(16 sentences)

Sequence

12277 reads, 968 reads per million, 11 experiments

gagguugugugugugugcguguguugucuugcuuUAGCAGCAUGUAAAUAUUGGAGuuacuccuuggccaaugccUCCAAUAUUGCUCGUGCUGCUGAagcaagaagucaccaagcagcacaugcacgucauccuu
((((.((((((((((((((((((...((((((((((((((((((..(((((((((..........(((....))))))))))))...))))))))))))))))))...)))...)).))))))))))).)).))))

Structure

    u  -           -  ---   uug                  -UA         Guuacuccuu   c 
gagg ug ugugugugugc gu   gug   ucuugcuuUAGCAGCAUG   AAUAUUGGA          ggc a
|||| || ||||||||||| ||   |||   ||||||||||||||||||   |||||||||          |||  
uucc ac gcacguacacg cg   cac   agaacgaAGUCGUCGUGC   UUAUAACCU          ccg a
    u  u           a  aac   uga                  UCG         ----------   u 

Annotation confidence High

Genome context

chr9: 29652352-29652487 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-16c

Mature dre-miR-16c-5p

• Accession: MIMAT0001776
• Description: Danio rerio dre-miR-16c-5p mature miRNA
• Sequence: 35 - UAGCAGCAUGUAAAUAUUGGAG - 56
• Evidence: experimental ; cloned [1]

Mature dre-miR-16c-3p

• Accession: MIMAT0031937
• Description: Danio rerio dre-miR-16c-3p mature miRNA
• Sequence: 76 - UCCAAUAUUGCUCGUGCUGCUGA - 98
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293