Stem-loop gga-mir-16-1

Accession

MI0001185

Description

Gallus gallus gga-mir-16-1 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

22 open access papers mention gga-mir-16-1
(229 sentences)

Sequence

31613 reads, 392 reads per million, 5 experiments

gucugucauacucUAGCAGCACGUAAAUAUUGGUGuuaaaacuguaaauaucuCCAGUAUUAACUGUGCUGCUGAAguaaggcu
....(((.((((.(((((((((((.((((((((.(................).)))))))).)).))))))))).)))).))).

Structure

gucu   a    c         -  A        U uuaaaac 
    guc uacu UAGCAGCAC GU AAUAUUGG G       u
    ||| |||| ||||||||| || |||||||| |        
    cgg augA GUCGUCGUG CA UUAUGACC c       g
---u   a    A         U  A        u uauaaau 

Annotation confidence High

Genome context

chr1: 169399051-169399134 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-16-1

Mature gga-miR-16-5p

• Accession: MIMAT0001116
• Description: Gallus gallus gga-miR-16-5p mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGUG - 35
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-16-1-3p

• Accession: MIMAT0026500
• Description: Gallus gallus gga-miR-16-1-3p mature miRNA
• Sequence: 54 - CCAGUAUUAACUGUGCUGCUGAA - 76
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45