Stem-loop sequence gga-mir-17

Accession

MI0001184 (change log)

Description

Gallus gallus miR-17 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

19 open access papers mention gga-mir-17
(102 sentences)

Stem-loop

        a       -ca        a  g     gua  gaua 
5' gucag guaaugu   aagugcuu ca ugcag   gu    u
   ||||| |||||||   |||||||| || |||||   ||     
3' caguu uauuacg   uucacgga gu acguc   ca    a
        g       aug        a  g     auc  agau 

Deep sequencing

80145 reads, 1e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 148023974-148024058 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-17

• gga-mir-17: chr1: 148023974-148024058 [-]
• gga-mir-18a: chr1: 148023819-148023911 [-]
• gga-mir-19a: chr1: 148023685-148023765 [-]
• gga-mir-20a: chr1: 148023499-148023596 [-]
• gga-mir-19b: chr1: 148023376-148023462 [-]
• gga-mir-92-1: chr1: 148023263-148023340 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075C925_9031
• miRBase Tracker:MI0001184

Mature sequence gga-miR-17-5p

• Accession: MIMAT0001114
• Sequence: 14 - caaagugcuuacagugcagguagu - 37
• Deep sequencing: 73638 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00002FDD5B_9031
• Predicted targets:
  • TargetScanVert:gga-miR-17-5p
  • miRDB:gga-miR-17-5p

Mature sequence gga-miR-17-3p

• Accession: MIMAT0001115
• Sequence: 52 - acugcagugaaggcacuugu - 71
• Deep sequencing: 6500 reads, 5 experiments
• Evidence: by similarity; MI0000071
• Database links:
  • RNAcentral:URS0000460483_9031
• Predicted targets:
  • TargetScanVert:gga-miR-17-3p
  • miRDB:gga-miR-17-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).