miRBase entry: pab-MIR482q

Stem-loop pab-MIR482q

Accession

MI0037156

Description

Picea abies pab-MIR482q precursor miRNA

Literature search

2 open access papers mention pab-MIR482q
(16 sentences)

Sequence

25334 reads, 999.0 reads per million, 97 experiments

guuacagacggaagcUCUACAAGUUCGCGUGAUUaguguguauggaguggccacgcuggaaaaauauuguugcucaaaaugagcuacaaucucuagaaaguuauugauguuucugaugugggucacagucucuugagauuguugagaggaaaaaucaauuuagauauggaugaaaauuucauauuauauuuaaaucgauuuuugaauaacaauuuugagaaacuguaagccaaaucacaauaucacaagucacugacuuuguagguguuguagauuguuuugagcaacgaugUCUUUCCAACGCCGGCCAUUCCauauacaccaaucaccccaacuuguagaguuucagcgaac
..........(((((((((((((((.(.((((((.(((((((((((((((((.((.((((((.(((((((((((((((((((.(((((((.((((.(((((((.(((((((..((((.(((.(.(((((.((((((((((((((.....(((((((.(((((((((((((((((...))))).)))))))))))).)))))))...)))))))))))))).))))).).))).)))).)))))))........))))))).)))).))))))).))))))))))))))))))).)))))).))..))))))))))))))))).)))))).).))))))))))))))).......

Structure

guuacagacg               C C      a                 -a  c      a                   g       c    g       -------u       uc    g   g c     c              agagg       a            -     a 
          gaagcUCUACAAGUU G GUGAUU guguguauggaguggcc  cg uggaaa auauuguugcucaaaauga cuacaau ucua aaaguua        ugauguu  ugau ugg u acagu ucuugagauuguug     aaaaauc auuuagauaugg augaa  
          ||||||||||||||| | |||||| |||||||||||||||||  || |||||| ||||||||||||||||||| ||||||| |||| |||||||        |||||||  |||| ||| | ||||| ||||||||||||||     ||||||| |||||||||||| ||||| a
          cuuugagauguucaa c cacuaa cacauauaCCUUACCGG  GC ACCUUU Uguagcaacgaguuuuguu gauguug ggau uuucagu        acuauaa  acua acc a uguca agaguuuuaacaau     uuuuuag uaaauuuauauu uacuu  
---caagcga               c c      c                 CC  A      C                   a       u    g       cacugaac       -c    a   g a     a              --aag       c            a     u

Annotation confidence Low

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Genome context

MA_10425802: 613-966 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482q

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pab-miR482q-5p

Accession	MIMAT0057835
Description	Picea abies pab-miR482q-5p mature miRNA
Sequence	16 - UCUACAAGUUCGCGUGAUU - 34
Evidence	experimental unknown

Mature pab-miR482q-3p

Accession	MIMAT0045258
Description	Picea abies pab-miR482q-3p mature miRNA
Sequence	293 - UCUUUCCAACGCCGGCCAUUCC - 314
Evidence	experimental Illumina [1]

References

PubMed ID: 26318183
Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
"Xia R, Xu J, Arikit S, Meyers BC"
"Mol Biol Evol (2015) 32:2905-2918