Stem-loop pab-MIR11580

Accession

MI0037094

Description

Picea abies pab-MIR11580 precursor miRNA

Sequence

uuguugucgccUUUGGAUUAUUGGGUUGCAUCcacacuuguuauauaguuuugcauacucuuguuuccuuuccaaugguguugacaagaauuaacguauucgagguuaacagccaguaaccacacccauggcuauuacaugcauauauguucacaccuguuauauugcuuaguguggaugcaucccaaauguccaaaugugaugauaa
.(((((((((.(((((((..(((((.((((((((((((.((.((((((....(((......)))..((........)).((((((..((((......))))...))))))(((((.............)))))...(((((....))))).........)))))).))..)))))))))))).)))))..))))))).))))))))).

Structure

u         c       UA     U            -u  u      ------------------uuuugcauacucuuguuuccuuuccaauggu      -aa    ua 
 uguugucgc UUUGGAU  UUGGG UGCAUCcacacu  gu auauag                                                 guugac   gaau  a
 ||||||||| |||||||  ||||| ||||||||||||  || ||||||                                                 ||||||   ||||   
 auaguagug aaaccug  aaccc acguagguguga  cg uauauu                                                 caauug   cuua  c
a         u       ua     u            uu  u      guccacacuuguauauacguacauuaucgguacccacaccaaugaccga      gag    ug 

Annotation confidence Not enough data

Genome context

MA_121360: 10235-10442 [+]

Mature pab-miR11580

• Accession: MIMAT0045192
• Description: Picea abies pab-miR11580 mature miRNA
• Sequence: 12 - UUUGGAUUAUUGGGUUGCAUC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918