Stem-loop pab-MIR482w

Accession

MI0037014

Description

Picea abies pab-MIR482w precursor miRNA

Literature search

1 open access papers mention pab-MIR482w
(5 sentences)

Sequence

gugauugauccgucugauacugugauuuggucacagucucucaaguuuguugagggaaaaauaacuuagagauggaugaaauucaguuuacagacauuucauucauaucuaaguugauucgcugaacaauuUUGAGAAACUGUGAGCCAAAUCacaauaccaugcauacaucacucac
((((.((((..((.((.((.(((((((((((((((((.(((((((.(((((.((.(((...(((((((((.(((((((((((((........)).))))))))))).))))))))).))).)).))))).))))))).))))))).)))))))))).)).)).))....)))).))))

Structure

    u    --cc  c  a  c          -       c       u     g  g   aaa         g           -  agu 
guga ugau    gu ug ua ugugauuugg ucacagu ucucaag uuguu ag gaa   uaacuuaga auggaugaaau uc   u
|||| ||||    || || || |||||||||| ||||||| ||||||| ||||| || |||   ||||||||| ||||||||||| ||    
cacu acua    cg ac au acaCUAAACC AGUGUCA AGAGUUu aacaa uc cuu   guugaaucu uacuuacuuua ag   u
    c    caua  u  c  a          G       A       u     g  g   --a         a           c  aca 

Annotation confidence Not enough data

Genome context

MA_10425802: 4812-4989 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482w

Mature pab-miR482w

• Accession: MIMAT0045112
• Description: Picea abies pab-miR482w mature miRNA
• Sequence: 132 - UUGAGAAACUGUGAGCCAAAUC - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918