Stem-loop pab-MIR11498a

Accession

MI0036957

Description

Picea abies pab-MIR11498a precursor miRNA

Sequence

auggguaucgugucauauuacaucacgaauacaaccgcgggaaauggaggaauuuuugcaacaagaccugauccgaaguacuggauuguuuuguaauaggacaaggacuacaacccaucgcccccaguugucgccaaaauucuuugagaaacaccauuuugucucacuaccuaauugUAUCUGUGAUGUAAUAUGACAugaucccau
(((((.(((((((((((((((((((((.((((((....(((.....((((((((((.((.(((((((..((((((......))))))))))))).....(((((((.................))..))))))).))))))))))((((............))))....)))..)))))).))))))))))))))))))))))))))

Structure

     u                     a      ccgc   -------------------aaaug          u  -------------------------------------a       cu      aa 
auggg aucgugucauauuacaucacg auacaa    ggg                        gaggaauuuu gc                                      acaagac  gauccg  g
||||| ||||||||||||||||||||| ||||||    |||                        |||||||||| ||                                      |||||||  ||||||   
uaccc uaguACAGUAUAAUGUAGUGU UAUguu    ucc                        uuucuuaaaa cg                                      uguuuug  uuaggu  u
     -                     C      --aa   aucacucuguuuuaccacaaagag          c  cuguugacccccgcuacccaacaucaggaacaggauaa       --      ca 

Annotation confidence Not enough data

Genome context

MA_5822241: 158-364 [+]

Mature pab-miR11498a

• Accession: MIMAT0045055
• Description: Picea abies pab-miR11498a mature miRNA
• Sequence: 178 - UAUCUGUGAUGUAAUAUGACA - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918