Stem-loop pab-MIR11484

Accession

MI0036937

Description

Picea abies pab-MIR11484 precursor miRNA

Sequence

415 reads, 49.0 reads per million, 73 experiments

uuacucaaauuucaaguguacgcacucguuggauguggaauuaaauucuaucucugacaaauaccuacuUGCAUACUUUUGAUAGACucacagugagauaaacuggagauacaugaaaaaacgcauuucucacuuguuggauacggaauuUAAUUCCACAUCCAAUGACUGccuacacuugaaaugugaguaa
.((((((.((((((((((((.(((.((((((((((((((((((((((((...((((((((.........(((....((((.((..((((.((((.......))))))).)..)).))))...)))........))))))))...)))))))))))))))))))))))).))).)))))))))))).)))))).

Structure

u      a            c   c                        auc        auaccuacu   AUAC    G  AG -   a    ga 
 uacuca auuucaagugua gca ucguuggauguggaauuaaauucu   ucugacaa         UGC    UUUU AU  A Cuc cagu  g
 |||||| |||||||||||| ||| ||||||||||||||||||||||||   ||||||||         |||    |||| ||  | ||| ||||  a
 augagu uaaaguucacau cGU AGUAACCUACACCUUAAUuuaagg   agguuguu         acg    aaaa ua  u gag guca  u
a      g            c   C                        cau        -cacucuuu   -caa    g  ca a   -    aa 

Annotation confidence Low

Genome context

MA_448081: 1895-2087 [+]

Mature pab-miR11484-5p

• Accession: MIMAT0057708
• Description: Picea abies pab-miR11484-5p mature miRNA
• Sequence: 70 - UGCAUACUUUUGAUAGAC - 87
• Evidence: experimental ; unknown

Mature pab-miR11484-3p

• Accession: MIMAT0045035
• Description: Picea abies pab-miR11484-3p mature miRNA
• Sequence: 151 - UAAUUCCACAUCCAAUGACUG - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918