Stem-loop pab-MIR11476b

Accession

MI0036921

Description

Picea abies pab-MIR11476b precursor miRNA

Sequence

113258 reads, 3512.0 reads per million, 102 experiments

auuucGAUUGCAGUAGGGUUGUUUAGCagugaacaaacaacccauuuaauggacgggccugaucgcugcccauauugacaugcccauucaauuuguuguguuuuacucuUAAGCAGCCCUUCUCCGAUCucuuu
.....(((((.((.((((((((((((.((((((...(((((..((....((((.((((.((.(((..........))))).)))).))))))..)))))..)))))).)))))))))))).)).))))).....

Structure

auuuc     C  U            C      caa     cc  uuaa    c    c  a   cugc 
     GAUUG AG AGGGUUGUUUAG agugaa   acaac  au    ugga gggc ug ucg    c
     ||||| || |||||||||||| ||||||   |||||  ||    |||| |||| || |||     
     CUAGC UC UCCCGACGAAUu ucauuu   uguug  ua    acuu cccg ac agu    c
uuucu     C  U            c      -ug     uu  ----    a    u  -   uaua 

Annotation confidence High

Genome context

MA_535714: 4929-5062 [-]

Mature pab-miR11476b-5p

• Accession: MIMAT0045019
• Description: Picea abies pab-miR11476b-5p mature miRNA
• Sequence: 6 - GAUUGCAGUAGGGUUGUUUAGC - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR11476b-3p

• Accession: MIMAT0057698
• Description: Picea abies pab-miR11476b-3p mature miRNA
• Sequence: 110 - UAAGCAGCCCUUCUCCGAUC - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918