Stem-loop pab-MIR11423j

Accession

MI0036904

Description

Picea abies pab-MIR11423j precursor miRNA

Sequence

323 reads, 44.0 reads per million, 78 experiments

gcuguacgggcgcgguacggccccgaaacgcgacuggcCGUACCGUACGACGUUUCCcuuuugagaaacgccguacgguaCGGCUAGCAGCGUUUCGGGGCcguaccguacucguuucggc
((((.(((((.((((((((((((((((((((..((((((((((((((((.((((((.(....).)))))).))))))))))))))))..)))))))))))))))))))).)))))..))))

Structure

    -u     c                    ga                A      C u 
gcug  acggg gcgguacggccccgaaacgc  cuggcCGUACCGUACG CGUUUC c u
||||  ||||| ||||||||||||||||||||  |||||||||||||||| |||||| |  
cggc  ugcuc ugccaugcCGGGGCUUUGCG  GAUCGGCauggcaugc gcaaag g u
    uu     a                    AC                c      a u 

Annotation confidence Low

Genome context

MA_16094: 6397-6517 [-]

Mature pab-miR11423j-5p

• Accession: MIMAT0057689
• Description: Picea abies pab-miR11423j-5p mature miRNA
• Sequence: 39 - CGUACCGUACGACGUUUCC - 57
• Evidence: experimental ; unknown

Mature pab-miR11423j-3p

• Accession: MIMAT0045002
• Description: Picea abies pab-miR11423j-3p mature miRNA
• Sequence: 81 - CGGCUAGCAGCGUUUCGGGGC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918