miRBase entry: pab-MIR11462

Stem-loop pab-MIR11462


Accession
MI0036897
Description
Picea abies pab-MIR11462 precursor miRNA


Sequence

8341 reads, 250.0 reads per million, 98 experiments
cuucucguggccgggccgagcagcuUCUGCCAGAGUGUGGCCGCGGAuuuugcgucugugguuguagugguggcaccauacugguacaaagugaacugCGCGGUUACUCUCUCUCAGAAGcugcuccgccauggcaagaucag
....((...(((((((.((((((((((((..((((.(((((((((.(.(((((...((((.(.(((.((((...))))))).).))))..))))).).))))))))).))))..)))))))))))).))).))))..))....

Structure
cuuc  gug    -   c            CC    U         G u     guc    g u   g    g 
    uc   gccg ggc gagcagcuUCUG  AGAG GUGGCCGCG A uuugc   ugug u gua uggu  
    ||   |||| ||| ||||||||||||  |||| ||||||||| | |||||   |||| | ||| |||| g
    ag   cggu ccg cucgucGAAGAC  UCUC CAUUGGCGC u aagug   acau g cau acca  
gacu  -aa    a   c            UC    U         g c     -aa    g u   -    c 


Annotation confidence High
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Genome context
MA_721368: 6889-7031 [-]

Database links

Mature pab-miR11462-5p

Accession MIMAT0044995
Description Picea abies pab-miR11462-5p mature miRNA
Sequence 26 - UCUGCCAGAGUGUGGCCGCGGA - 47
Evidence experimental
Illumina [1]

Mature pab-miR11462-3p

Accession MIMAT0057687
Description Picea abies pab-miR11462-3p mature miRNA
Sequence 99 - CGCGGUUACUCUCUCUCAGAAG - 120
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918