Stem-loop pab-MIR11451

Accession

MI0036879

Description

Picea abies pab-MIR11451 precursor miRNA

Sequence

1147 reads, 77.0 reads per million, 42 experiments

uuaguauuucuucucucuguaUUAAUCCACAUAAUAAUUGGCaaagcauagugagacgggggcuauuuucugagggcCAAUUACUAUGUGGAUUGCUacggagggacgaaguauugg
.(((((((((.((((((((((.(((((((((((.((((((((..((.(((((.........)))))...))....)))))))).))))))))))).)))))))))).))))))))).

Structure

u         u          U           A        --aa  --c     gag 
 uaguauuuc ucucucugua UAAUCCACAUA UAAUUGGC    ag   auagu   a
 ||||||||| |||||||||| ||||||||||| ||||||||    ||   |||||   c
 guuaugaag agggaggcaU GUUAGGUGUAU AUUAACcg    uc   uaucg   g
g         c          C           C        ggag  uuu     ggg 

Annotation confidence Medium

Genome context

MA_74267: 14251-14367 [+]

Mature pab-miR11451-5p

• Accession: MIMAT0057676
• Description: Picea abies pab-miR11451-5p mature miRNA
• Sequence: 22 - UUAAUCCACAUAAUAAUUGGC - 42
• Evidence: experimental ; unknown

Mature pab-miR11451-3p

• Accession: MIMAT0044977
• Description: Picea abies pab-miR11451-3p mature miRNA
• Sequence: 78 - CAAUUACUAUGUGGAUUGCU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918