Stem-loop pab-MIR11425a

Accession

MI0036831

Description

Picea abies pab-MIR11425a precursor miRNA

Sequence

95698 reads, 2337.0 reads per million, 102 experiments

cgguaaacugcaagaagAGAAAGGUAUAGCUGUAAUAGUuaacuuguuuagaaaacaaugagagaacUUUCACAGCUAUAUCUUUUCCUucuagcucuuuuacug
(((((((..((.(((((.(((((((((((((((...((((..((((((........))))))..))))...))))))))))))))).))))).))...)))))))

Structure

       -cu  a     A               AAU    aa      uag 
cgguaaa   gc agaag GAAAGGUAUAGCUGU   AGUu  cuuguu   a
|||||||   || ||||| |||||||||||||||   ||||  ||||||    
gucauuu   cg ucuUC UUUUCUAUAUCGACA   Ucaa  gaguaa   a
       ucu  a     C               CUU    ga      caa 

Annotation confidence Medium

Genome context

MA_863490: 2630-2734 [+]

Mature pab-miR11425a-5p

• Accession: MIMAT0044929
• Description: Picea abies pab-miR11425a-5p mature miRNA
• Sequence: 18 - AGAAAGGUAUAGCUGUAAUAGU - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11425a-3p

• Accession: MIMAT0057642
• Description: Picea abies pab-miR11425a-3p mature miRNA
• Sequence: 68 - UUUCACAGCUAUAUCUUUUCCU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918