Stem-loop pab-MIR3627c

Accession

MI0036824

Description

Picea abies pab-MIR3627c precursor miRNA

Sequence

gagggccugcuguguuucACGCGCAUGAGAGAUGACACUGucguuauauauccucuucauucauuucaguuuaagagaugacacugucguuauauauccucuucauucauuucaguuuaagaugauaaagaguguauguauaagagcagugucaucucucugcgcacgaaacagagagauucuc
(((((.((.((.((((((..(((((.(((((((((((((((..((((((((((((((...(((((((.......))))))).............((((.((((.(..(......)..))))).))))))))).).))))))))..))))))))))))))))))))..)))))).)))).)))))

Structure

     c  g  g      AC     U               cg        - -     cauucauuucaguuuaagagaugacacugucguuaua    c    c uu au 
gaggg cu cu uguuuc  GCGCA GAGAGAUGACACUGu  uuauauau c cucuu                                     uauc ucuu a  c  u
||||| || || ||||||  ||||| |||||||||||||||  |||||||| | |||||                                     |||| |||| |  |   
cucuu ga ga acaaag  cgcgu cucucuacugugacg  aauaugua g gagaa                                     auag agaa u  g  u
     a  -  g      ca     -               ag        u u     -------------------------------------    u    - uu ac 

Annotation confidence Not enough data

Genome context

MA_3315: 50291-50474 [+]

Mature pab-miR3627c

• Accession: MIMAT0044922
• Description: Picea abies pab-miR3627c mature miRNA
• Sequence: 19 - ACGCGCAUGAGAGAUGACACUG - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918