Stem-loop pab-MIR950h

Accession

MI0036803

Description

Picea abies pab-MIR950h precursor miRNA

Literature search

1 open access papers mention pab-MIR950h
(5 sentences)

Sequence

555175 reads, 13330.0 reads per million, 102 experiments

acgaguguguuauugucgUCCGGGCCACGAUGGUUAAUGAucguuuaggauguucAGAACCACCGUGGCCCUGAUGagaagaauacccucuugu
..(((.(((((.((.(((((.((((((((.(((((..(((.((((...)))).))).))))).)))))))).))))).)).))))).)))....

Structure

--ac   u     a  g     C        A     AA   u    u 
    gag guguu uu ucgUC GGGCCACG UGGUU  UGA cguu  
    ||| ||||| || ||||| |||||||| |||||  ||| |||| a
    cuc cauaa aa aGUAG CCCGGUGC ACCAA  Acu guag  
uguu   c     g  g     U        C     -G   u    g 

Annotation confidence High

Genome context

MA_51829: 9666-9759 [-]

Mature pab-miR950h-5p

• Accession: MIMAT0057623
• Description: Picea abies pab-miR950h-5p mature miRNA
• Sequence: 19 - UCCGGGCCACGAUGGUUAAUGA - 40
• Evidence: experimental ; unknown

Mature pab-miR950h-3p

• Accession: MIMAT0044901
• Description: Picea abies pab-miR950h-3p mature miRNA
• Sequence: 56 - AGAACCACCGUGGCCCUGAUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918