Stem-loop pab-MIR946e

Accession

MI0036791

Description

Picea abies pab-MIR946e precursor miRNA

Literature search

1 open access papers mention pab-MIR946e
(4 sentences)

Sequence

aauuguuguguucagaguguacagauguggauauauaaggguuaguaaacaguacaaaacccauuuaauagagauuccgugagaaacaucuuauuguagauuguuggcuguuucagauccagcaagcaacaaagcagcuguauuuugaucgccauacucauuaaauggguugucuguuugcucuuuaCCAGCCCUUCUGCUAUCCACAUucguacuaguuuguccacaucaauu
(((((.((((..((((.(((((.((((((((((((.((((((((((((((((.(((..(((((((((((.(((.....((((((....))))))..........((((.(((..((((.((((..((......)).)))).)))).))).))))..)))))))))))))))))))))))))).......))))))).)).)))))))))).)))).).))))..)))).)))))

Structure

     u    uu    g -    a          -  u       -------         u   aa           a   auuccgugagaaacaucuuauuguagauugu    u   uc    c    aa  aa 
aauug ugug  caga u guac gauguggaua ua aaggguu       aguaaacag aca  acccauuuaau gag                               uggc guu  agau cagc  gc  c
||||| ||||  |||| | |||| |||||||||| || |||||||       ||||||||| |||  ||||||||||| |||                               |||| |||  |||| ||||  ||   
uuaac acac  guuu a caug uUACACCUAU GU UUCCCGA       ucguuuguc ugu  uggguaaauua cuc                               accg uag  uuua gucg  cg  a
     u    cu    g u    c          C  C       CCauuuc         -   --           -   -----------------------------au    c   -u    u    -a  aa 

Annotation confidence Not enough data

Genome context

MA_85105: 11372-11605 [+]

Mature pab-miR946e

• Accession: MIMAT0044889
• Description: Picea abies pab-miR946e mature miRNA
• Sequence: 188 - CCAGCCCUUCUGCUAUCCACAU - 209
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918