Stem-loop pab-MIR946d

Accession

MI0036790

Description

Picea abies pab-MIR946d precursor miRNA

Literature search

1 open access papers mention pab-MIR946d
(4 sentences)

Sequence

aaauugaugcguucagaguguacagauguggauauagaaggguuaguuaguaaacaguacgaagcccaucuaauagagauuccaugagaggcauuuuauugcaagauguuggcuguucgagaucaagcgacuguguucgagcagugcauuuuaauggcaauacucauuaaauggguugccuguuuuuucuuuacCAGCCCUUCUGCUAUCCACAACaguacuaauuuguccacaucaauuu
(((((((((.(..((((..((((.(.((((((((((((((((((.((.((.((((((.....(((((((.((((.((((((((((.....(((......)))(((((((..((((((((((..((......))..))))))))))))))))).)))).))).))))))).)))))))..))))))...))..)).)))))))))).)))))))).).))))...))))..).)))))))))

Structure

         c uu    -gu    a a        -          a  -u  --u      uacga       c    a   -   -    gagaggcauuuuauugc       ug          au  ag 
aaauugaug g  caga   guac g uguggaua uagaaggguu gu  ag   aaacag     agcccau uaau gag auu ccau                 aagaugu  gcuguucgag  ca  c
||||||||| |  ||||   |||| | |||||||| |||||||||| ||  ||   ||||||     ||||||| |||| ||| ||| ||||                 |||||||  ||||||||||  ||   
uuuaacuac c  guuu   caug C ACACCUAU GUCUUCCCGA ca  uc   uuuguc     uugggua auua cuc uaa ggua                 uuuuacg  ugacgagcuu  gu  g
         a cu    aau    a A        C          C  uu  uuu      ---cg       a    -   a   c    ----------------a       --          gu  ca 

Annotation confidence Not enough data

Genome context

MA_53821: 9022-9262 [+]

Mature pab-miR946d

• Accession: MIMAT0044888
• Description: Picea abies pab-miR946d mature miRNA
• Sequence: 195 - CAGCCCUUCUGCUAUCCACAAC - 216
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918