Stem-loop pab-MIR11402

Accession

MI0036708

Description

Picea abies pab-MIR11402 precursor miRNA

Sequence

1484 reads, 295.0 reads per million, 61 experiments

agacccucccagacucaguugggagccugacaggccuucaaagucuucaauuggguugGCGCUCCACUCUGCAAACGCUCCCAGACUAUGUUGCGAaccugacgcgccuccaacgucuuaacuugggcgggugcu
..((((.(((((((...((((((.((.((.((((((..((.(((((......(((..((((..............)))))))))))).))..).)..)))).)).)).)))))))))......)))).))))...

Structure

-ag    u    ------   uca      a  c  a    -- - uu  a     ucaauu   uu    CUCCAC 
   accc ccca      gac   guuggg gc ug cagg  c c  ca agucu      ggg  gGCG      U
   |||| ||||      |||   |||||| || || ||||  | |  || |||||      |||  ||||       
   uggg gggu      cug   caaccu cg gc gucc  G G  GU UCAGA      CCC  UCGC      C
ucg    c    ucaauu   ---      c  c  a    aA C UU  A     ------   --    AAACGU 

Annotation confidence Medium

Genome context

MA_69557: 7746-7880 [-]

Mature pab-miR11402-5p

• Accession: MIMAT0044806
• Description: Picea abies pab-miR11402-5p mature miRNA
• Sequence: 59 - GCGCUCCACUCUGCAAACGCU - 79
• Evidence: experimental ; Illumina [1]

Mature pab-miR11402-3p

• Accession: MIMAT0061504
• Description: Picea abies pab-miR11402-3p mature miRNA
• Sequence: 76 - CGCUCCCAGACUAUGUUGCGA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918