Stem-loop pab-MIR1313d

Accession

MI0036707

Description

Picea abies pab-MIR1313d precursor miRNA

Literature search

1 open access papers mention pab-MIR1313d
(1 sentences)

Sequence

ucuuccugaugguauucUACCACUGAAAUUAUUGUUCGAaaugacaccugcagcucaucgagguauaccacgagcucaucgagguauaccgccgugguaugguauccuucaaugcaucgccaaucuaaccuaguugcagggcugcaacacaugguaugauuuuggauccauugaggaauaaucaccaaguugcauggguggguuuauccaacaauaauuucaguggaagacuacugucgaucuggaaga
((((((((((((((.(((.(((((((((((((((((.((.....(((((((((((...((.((((((((.(((.....))).))))))))..))((((....(((.((((((((.(((...((((..(((..((((((....))))))....)))..))))...))).)))))))).)))...))))))))))..)))))......)).))))))))))))))))).))).))))))))....))))))

Structure

      ----        u   A                 C  -aauga     --      caucgagguauaccacgagcucaucgagguauaccgccg    augg   c        c   gcc    ua   --ua      g 
ucuucc    ugauggua ucU CCACUGAAAUUAUUGUU GA      caccu  gcagcu                                       uggu    uau cuucaaug auc   aauc  acc    guugca g
||||||    |||||||| ||| ||||||||||||||||| ||      |||||  ||||||                                       ||||    ||| |||||||| |||   ||||  |||    ||||||  
agaagg    gcugucau aga ggugacuuuaauaacaa cu      guggg  cguuga                                       acca    aua ggaguuac uag   uuag  ugg    caacgu g
      ucua        c   a                 c  auuugg     ua      ---------------------------------------    -cua   a        c   guu    ua   uaca      c 

Annotation confidence Not enough data

Genome context

MA_941353: 1099-1347 [-]

Mature pab-miR1313d

• Accession: MIMAT0044805
• Description: Picea abies pab-miR1313d mature miRNA
• Sequence: 18 - UACCACUGAAAUUAUUGUUCGA - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918