Stem-loop pab-MIR1312a

Accession

MI0036701

Description

Picea abies pab-MIR1312a precursor miRNA

Literature search

1 open access papers mention pab-MIR1312a
(2 sentences)

Sequence

258669 reads, 21689.0 reads per million, 101 experiments

acuuucucaccgaaaacaUCUACAUCGCCAUUUCUCCucgaauuaugcggauucgaaccugcaugcucuuucucaucguguagucgcaaaaaugaaaauggacuucaaccaaaggagcaaauuuauauauuaguuuuuuucuacacaaUUCGGAGAGAAAAUGGCGACAUagauguucucggugacagu
......(((((((.((((((((..((((((((((((.(((((((((((((........))))))(((((((.......((.((((...............)))).))....)))))))(((((........)))))..........))))))).))).)))))))))..)))))))).)))))))....

Structure

acuuuc       a        CA         -   C       --------augcggauucgaaccugcau       cucaucg  u    gcaaaa 
      ucaccga aacaUCUA  UCGCCAUUU CUC ucgaauu                            gcucuuu       ug aguc      a
      ||||||| ||||||||  ||||||||| ||| |||||||                            |||||||       || ||||      u
      aguggcu uuguagaU  AGCGGUAAA GAG GGCUUaa                            cgaggaa       ac ucag      g
--ugac       c        AC         A   A       cacaucuuuuuuugauuauauauuuaaa       ---acca  u    guaaaa 

Annotation confidence Medium

Genome context

MA_10430186: 18686-18874 [-]

Mature pab-miR1312a-5p

• Accession: MIMAT0057542
• Description: Picea abies pab-miR1312a-5p mature miRNA
• Sequence: 19 - UCUACAUCGCCAUUUCUCC - 37
• Evidence: experimental ; unknown

Mature pab-miR1312a-3p

• Accession: MIMAT0044799
• Description: Picea abies pab-miR1312a-3p mature miRNA
• Sequence: 149 - UUCGGAGAGAAAAUGGCGACAU - 170
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918