Stem-loop pab-MIR399f

Accession

MI0036695

Description

Picea abies pab-MIR399f precursor miRNA

Literature search

1 open access papers mention pab-MIR399f
(1 sentences)

Sequence

guacagggaaguuacaGGCAGCUCUCCUUUGGCAGGagggaggaugauucaugauacauauaguagugaauuuauguuguuacauauaguagugaauugguccaguaauuagacugccauuccugccugccaaaggagaauugcccugcgacugcacuguau
((((((...((((.(((((((.((((((((((((((.(((((...(((((((..(((.....))))))))))(((((....)))))..(((((.(((((......)))))..)))))..))))).)))))))))))))).))).)))).))))...))))))

Structure

      gga    a    -   C              a     gaugauucaugauacauauaguagugaauuuauguuguuacauaua     -g     gu 
guacag   aguu caGG CAG UCUCCUUUGGCAGG gggag                                              guagu  aauug  c
||||||   |||| |||| ||| |||||||||||||| |||||                                              |||||  |||||   
uauguc   ucag gucc guu agaggaaaccgucc uccuu                                              cguca  uuaau  c
      acg    c    c   a              g     --------------------------------------------ac     ga     ga 

Annotation confidence Not enough data

Genome context

MA_214874: 1753-1914 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR399f

Mature pab-miR399f

• Accession: MIMAT0044793
• Description: Picea abies pab-miR399f mature miRNA
• Sequence: 17 - GGCAGCUCUCCUUUGGCAGG - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918