Stem-loop pab-MIR397s

Accession

MI0036685

Description

Picea abies pab-MIR397s precursor miRNA

Literature search

1 open access papers mention pab-MIR397s
(2 sentences)

Sequence

1873 reads, 286.0 reads per million, 70 experiments

ugcUCAUCAUUGAGAGCAGCAUUGaccguuugaacugaccaacaguucgaccggucgAUGCUGCAUUCAAUGAUAAucu
.....(((((((((.(((((((((((((.((((((((.....)))))))).))))))))))))).))))))))).....

Structure

ugcUC         A             u        a 
     AUCAUUGAG GCAGCAUUGaccg uugaacug c
     ||||||||| ||||||||||||| |||||||| c
     UAGUAACUU CGUCGUAgcuggc agcuugac a
ucuAA         A             c        a 

Annotation confidence Medium

Genome context

MA_10142494: 326-404 [+]

Mature pab-miR397s-5p

• Accession: MIMAT0044783
• Description: Picea abies pab-miR397s-5p mature miRNA
• Sequence: 4 - UCAUCAUUGAGAGCAGCAUUG - 24
• Evidence: experimental ; Illumina [1]

Mature pab-miR397s-3p

• Accession: MIMAT0057532
• Description: Picea abies pab-miR397s-3p mature miRNA
• Sequence: 58 - AUGCUGCAUUCAAUGAUAA - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918