Stem-loop pab-MIR397o

Accession

MI0036681

Description

Picea abies pab-MIR397o precursor miRNA

Literature search

1 open access papers mention pab-MIR397o
(2 sentences)

Sequence

1880 reads, 287.0 reads per million, 71 experiments

agauaaaugcUCAUCAUUGAGAGCAGCAUUGaccuuuugaaccgaacaacaauuugaugggucgAUGCUGCAUUCAACGAUAAGCuuuuacu
...((((.(((.(((.(((((.(((((((((((((.(((((...........))))).))))))))))))).))))).))).))).))))..

Structure

aga    u   C   A     A             u     ccga 
   uaaa gcU AUC UUGAG GCAGCAUUGaccu uugaa    a
   |||| ||| ||| ||||| ||||||||||||| |||||    c
   auuu CGA UAG AACUU CGUCGUAgcuggg aguuu    a
-uc    u   A   C     A             u     aaca 

Annotation confidence High

Genome context

MA_5316261: 81-172 [-]

Mature pab-miR397o-5p

• Accession: MIMAT0044779
• Description: Picea abies pab-miR397o-5p mature miRNA
• Sequence: 11 - UCAUCAUUGAGAGCAGCAUUG - 31
• Evidence: experimental ; Illumina [1]

Mature pab-miR397o-3p

• Accession: MIMAT0057528
• Description: Picea abies pab-miR397o-3p mature miRNA
• Sequence: 65 - AUGCUGCAUUCAACGAUAAGC - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918