Stem-loop pab-MIR396r

Accession

MI0036664

Description

Picea abies pab-MIR396r precursor miRNA

Literature search

1 open access papers mention pab-MIR396r
(5 sentences)

Sequence

gcggagaauccugucauauuuUUCCACGGCUUUCUUGAACUUcacgaucgguggugauugcggcggccgaucgcauugaugacagauccgaauaacaagaucaagaaugccgugggaagauauagugggauuccgu
(((((..((((((.((((((((((((((((.(((((((.(((..((((((((.((.......)).))))))))....(((.....)))........))).))))))).))))))))))))))).))))))))))))

Structure

     ga      u -               U       A   ---------------------ca        g  ga 
gcgga  auccug c auauuuUUCCACGGC UUCUUGA CUU                       cgaucggu gu  u
|||||  |||||| | ||||||||||||||| ||||||| |||                       |||||||| ||  u
ugccu  uagggu g uauagaagggugccg aagaacu gaa                       gcuagccg cg  g
     --      - a               u       a   caauaagccuagacaguaguuac        g  gc 

Annotation confidence Not enough data

Genome context

MA_9413159: 2809-2944 [-]

Mature pab-miR396r

• Accession: MIMAT0044762
• Description: Picea abies pab-miR396r mature miRNA
• Sequence: 22 - UUCCACGGCUUUCUUGAACUU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918