Stem-loop pab-MIR396o

Accession

MI0036661

Description

Picea abies pab-MIR396o precursor miRNA

Literature search

1 open access papers mention pab-MIR396o
(5 sentences)

Sequence

656379 reads, 14934.0 reads per million, 102 experiments

ugcggcgaaucccguuaugcuuUUCCACGGCUUUCUUGAACUUagugcucaggugguaggaaauguuuuccuagcagaucuggguacaaagCUCAAGAAAGCUGUGGGAAAacauaaaaggauucagua
....((((((((..(((((.(((((((((((((((((((.(((.(((((((((((.(((((((...))))))).))..))))))))).))).))))))))))))))))))).)))))..)))))).)).

Structure

ugcg  -      cg     c                   A   a         --  g       u 
    gc gaaucc  uuaug uuUUCCACGGCUUUCUUGA CUU gugcucagg  ug uaggaaa  
    || ||||||  ||||| ||||||||||||||||||| ||| |||||||||  || ||||||| g
    ug cuuagg  aauac AAAGGGUGUCGAAAGAACU gaa caugggucu  ac auccuuu  
---a  a      aa     a                   C   a         ag  g       u 

Annotation confidence High

Genome context

MA_56036: 5819-5947 [+]

Mature pab-miR396o-5p

• Accession: MIMAT0044759
• Description: Picea abies pab-miR396o-5p mature miRNA
• Sequence: 23 - UUCCACGGCUUUCUUGAACUU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR396o-3p

• Accession: MIMAT0057510
• Description: Picea abies pab-miR396o-3p mature miRNA
• Sequence: 92 - CUCAAGAAAGCUGUGGGAAA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918