Stem-loop pab-MIR396h

Accession

MI0036654

Description

Picea abies pab-MIR396h precursor miRNA

Literature search

1 open access papers mention pab-MIR396h
(5 sentences)

Sequence

1327727 reads, 30660.0 reads per million, 102 experiments

gaaucuugucauacuuUUCCACAGCUUUCUUGAACUUuacguguacgggacgaggagauucugauuucuacgucugcgauuaaagUUCAAGAAAACUGUGGGAAAGcaugguaggauuc
((((((((((((.(((((((((((.(((((((((((((((((.....(((((.((((((....)))))).))))))))..)))))))))))))).))))))))))).))))))))))))

Structure

            a           C              --   guacg     a      u 
gaaucuugucau cuuUUCCACAG UUUCUUGAACUUua  cgu     ggacg ggagau c
|||||||||||| ||||||||||| ||||||||||||||  |||     ||||| ||||||  
cuuaggauggua GAAAGGGUGUC AAAGAACUUgaaau  gcg     ucugc ucuuua u
            c           A              ua   -----     a      g 

Annotation confidence High

Genome context

MA_180436: 2719-2837 [+]

Mature pab-miR396h-5p

• Accession: MIMAT0044752
• Description: Picea abies pab-miR396h-5p mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACUU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR396h-3p

• Accession: MIMAT0057503
• Description: Picea abies pab-miR396h-3p mature miRNA
• Sequence: 86 - UUCAAGAAAACUGUGGGAAAG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918