Stem-loop pab-MIR319j

Accession

MI0036631

Description

Picea abies pab-MIR319j precursor miRNA

Literature search

1 open access papers mention pab-MIR319j
(3 sentences)

Sequence

10473 reads, 846.0 reads per million, 83 experiments

auagaauggAGCUCACUUCGGUCCAAAUGaggcuuucaugaaguuagaucugcugccgacucauccguccggcucuucuauaaaggaaaucaacgccauaggcuagccgaaugguugaugcgggagcugguuucuucuacguguugcccucuCUUGGCCUGAAGGGAGCUCCauaaucuau
((((((((((((((.((((((.((((..((((....((((.((..(((((.(((.(((..(((.((((.(((((..(((((...(........)...)))))..))))).)))).)))..))).))).)))))...)).))))....))))..)))).)))))).)))))))))..)))))

Structure

     --         A      U    AU    cuuu    a  -uu     u   g   ac   u    c     cu     aaa gaa 
auaga  auggAGCUC CUUCGG CCAA  Gagg    caug ag   agauc gcu ccg  uca ccgu cggcu  ucuau   g   a
|||||  ||||||||| |||||| ||||  ||||    |||| ||   ||||| ||| |||  ||| |||| |||||  |||||   |    
uaucu  uaCCUCGAG GAAGUC GGUU  cucc    gugc uc   uuugg cga ggc  agu ggua gccga  ggaua   c   u
     aa         G      C    Cu    cguu    a  uuc     u   g   gu   u    a     uc     ccg aac 

Annotation confidence High

Genome context

MA_328156: 3399-3579 [+]

Mature pab-miR319j-5p

• Accession: MIMAT0057488
• Description: Picea abies pab-miR319j-5p mature miRNA
• Sequence: 10 - AGCUCACUUCGGUCCAAAUG - 29
• Evidence: experimental ; unknown

Mature pab-miR319j-3p

• Accession: MIMAT0044729
• Description: Picea abies pab-miR319j-3p mature miRNA
• Sequence: 153 - CUUGGCCUGAAGGGAGCUCC - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918