Stem-loop pab-MIR319d

Accession

MI0036626

Description

Picea abies pab-MIR319d precursor miRNA

Literature search

1 open access papers mention pab-MIR319d
(3 sentences)

Sequence

cggggagcucccuucaagccaaauaaaaacaccguaagggcaaucuaacuccugugucaugcacaccauuaucuugagaccaaaaccguuucucgagcauugcaagacaauagaguccaggaaccagcaguugaaucauccccacguggcccuuggUUGGACUGAAGGGAGCGCCCcg
(((((.((((((((((..((((.........((....))........((((...((((.((((.......(((((((((...........))))))).)))))).))))...))))(((((..(((......((....))......)))..)))))))))..)))))))))).)))))

Structure

     a          ag    ---------------auaaaaacaccguaagggcaaucua    cug    a    caccauu  -       ccaa 
cgggg gcucccuuca  ccaa                                        acuc   uguc ugca       au cuugaga    a
||||| ||||||||||  ||||                                        ||||   |||| ||||       || |||||||    a
gcCCC CGAGGGAAGU  GGUU                                        ugag   acag acgu       ua gagcucu    c
     G          CA    gguucccggugcaccccuacuaaguugacgaccaaggacc    aua    a    -------  c       uugc 

Annotation confidence Not enough data

Genome context

MA_167209: 17810-17987 [+]

Mature pab-miR319d

• Accession: MIMAT0044724
• Description: Picea abies pab-miR319d mature miRNA
• Sequence: 157 - UUGGACUGAAGGGAGCGCCC - 176
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918