Stem-loop pab-MIR169e

Accession

MI0036617

Description

Picea abies pab-MIR169e precursor miRNA

Sequence

12779 reads, 359.0 reads per million, 69 experiments

gcauguagaggcagagaguguuacuCAGCCAAGAAUGACUUGCCCGcauacuguuguggauuaugguuccacauacacauugcaguuuugugGGUAGGUUGUUCUUGGCAAAGcaucgcucucuuccuuucaugc
(((((.(((((.((((((((...((..(((((((((((((((((((((.(((((((((((.......))))))........)))))..)))))))))))))))))))))..))...)))))))).))))))))))

Structure

     u     c        uua  CA                     -u     --------      uu 
gcaug agagg agagagug   cu  GCCAAGAAUGACUUGCCCGca  acugu        ugugga  a
||||| ||||| ||||||||   ||  |||||||||||||||||||||  |||||        ||||||  u
cguac uuucc ucucucgc   GA  CGGUUCUUGUUGGAUGGgugu  ugacg        acaccu  g
     -     u        uac  AA                     uu     uuacacau      ug 

Annotation confidence High

Genome context

MA_23777: 17784-17918 [+]

Mature pab-miR169e-5p

• Accession: MIMAT0044715
• Description: Picea abies pab-miR169e-5p mature miRNA
• Sequence: 26 - CAGCCAAGAAUGACUUGCCCG - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR169e-3p

• Accession: MIMAT0057483
• Description: Picea abies pab-miR169e-3p mature miRNA
• Sequence: 93 - GGUAGGUUGUUCUUGGCAAAG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918