Stem-loop pab-MIR166j

Accession

MI0036608

Description

Picea abies pab-MIR166j precursor miRNA

Literature search

1 open access papers mention pab-MIR166j
(3 sentences)

Sequence

288910 reads, 15180.0 reads per million, 99 experiments

guuguggGGACUGUUGUCUGGCUCGAGGUcauucagauucauauacuaauugauuaucagacugagugaugCCGGACCAGGCUUCAUUCCCCucaac
((((.(((((.((..((((((.(((..(((((((((....(((..(.....)..)))....)))))))))..))).))))))..)).))))).))))

Structure

    u     C  UU      C   AG         auuc   ua u 
guug ggGGA UG  GUCUGG UCG  GUcauucag    aua  c a
|||| ||||| ||  |||||| |||  |||||||||    |||  | a
caac CCCCU AC  CGGACC GGC  uagugaguc    uau  g u
    u     U  UU      A   Cg         agac   ua u 

Annotation confidence High

Genome context

MA_42952: 13390-13486 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR166j

Mature pab-miR166j-5p

• Accession: MIMAT0057474
• Description: Picea abies pab-miR166j-5p mature miRNA
• Sequence: 8 - GGACUGUUGUCUGGCUCGAGGU - 29
• Evidence: experimental ; unknown

Mature pab-miR166j-3p

• Accession: MIMAT0044706
• Description: Picea abies pab-miR166j-3p mature miRNA
• Sequence: 72 - CCGGACCAGGCUUCAUUCCCC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918