Stem-loop pab-MIR156ab

Accession

MI0036585

Description

Picea abies pab-MIR156ab precursor miRNA

Literature search

2 open access papers mention pab-MIR156ab
(7 sentences)

Sequence

1688 reads, 155.0 reads per million, 38 experiments

uuugUUGACAGGAGAUAGAGAGCACaugcgcucacaugcagaggcucugcguucgagguguauguGCUCUCUAUGCUCCUGUCGUCacg
..((.((((((((((((((((((((((((((((..(((((((...)))))))..)).))))))))))))))))).))))))))).))..

Structure

uu  U         -                 -  ac       g 
  ug UGACAGGAG AUAGAGAGCACaugcgc uc  augcaga  
  || ||||||||| ||||||||||||||||| ||  ||||||| g
  aC GCUGUCCUC UAUCUCUCGuguaugug ag  ugcgucu  
gc  U         G                 g  cu       c 

Annotation confidence High

Genome context

MA_880492: 4951-5039 [+]

Mature pab-miR156ab-5p

• Accession: MIMAT0044683
• Description: Picea abies pab-miR156ab-5p mature miRNA
• Sequence: 5 - UUGACAGGAGAUAGAGAGCAC - 25
• Evidence: experimental ; Illumina [1]

Mature pab-miR156ab-3p

• Accession: MIMAT0057457
• Description: Picea abies pab-miR156ab-3p mature miRNA
• Sequence: 66 - GCUCUCUAUGCUCCUGUCGUC - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918