Stem-loop pab-MIR156q

Accession

MI0036576

Description

Picea abies pab-MIR156q precursor miRNA

Literature search

2 open access papers mention pab-MIR156q
(7 sentences)

Sequence

cagagaaucugcaauugagggacaugugccuucuaucuucugccagcccaucacgcuucaccuucacaucuaaauuguuauuuucgaaagcagaagaaggugauuauguugUUGACAGAAGAUAGAGGGCACaugcgcuuacuuucagagaaucug
((((...((((.((.((((.(.((((((((((((((((((((.((((....((....((((((((...(((...(((.......)))....))).))))))))...))..)))).))))))))))))))))))))).)))).)).))))...))))

Structure

    gaa    c  u    g a                    c    ccau  cgcu        aca   -aaa   uu 
caga   ucug aa ugag g caugugccuucuaucuucug cagc    ca    ucaccuuc   ucu    uug  a
||||   |||| || |||| | |||||||||||||||||||| ||||    ||    ||||||||   |||    |||  u
gucu   agac uu auuc c guaCACGGGAGAUAGAAGAC GUUg    gu    aguggaag   aga    agc  u
    aag    u  c    g -                    A    --uu  -auu        --a   cgaa   uu 

Annotation confidence Not enough data

Genome context

MA_733025: 1138-1293 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR156q

Mature pab-miR156q

• Accession: MIMAT0044674
• Description: Picea abies pab-miR156q mature miRNA
• Sequence: 112 - UUGACAGAAGAUAGAGGGCAC - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918