Stem-loop osa-MIR5801c

Accession

MI0036497

Description

Oryza sativa osa-MIR5801c precursor miRNA

Sequence

132728 reads, 571.0 reads per million, 142 experiments

agauuuucuccgguccagcaaaaaguaccucgagguaccgguacauuacgguacugaaucgUUUCCGAUCGUUGGAUCUAgcuggacaguauggacauuguuagauccaacaaucgaAAACGAUUUGGUACCGUGAGGUaccgguaccucgagguacuuuuuauuggacuauagcaaaucu
((((((.((..(((((((.(((((((((((((((((((((((((.(((((((((((((((((((.((((.((((((((((((((..((...))..))..)))))))))))).)))).))))))))))))))))))).))))))))))))))))))))))))).)))))))..)).))))))

Structure

      u  cc       c                         a                   C    C            --  ga  g 
agauuu cu  gguccag aaaaaguaccucgagguaccgguac uuacgguacugaaucgUUU CGAU GUUGGAUCUAgc  ug  ca  
|||||| ||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||  ||  || u
ucuaaa ga  ucagguu uuuuucauggagcuccauggccaUG AGUGCCAUGGUUUAGCAAA gcua caaccuagauug  ac  gu  
      c  ua       a                         G                   a    a            uu  ag  a 

Annotation confidence Low

Genome context

8: 20930416-20930596 [+]

Mature osa-miR5801c-5p

• Accession: MIMAT0044646
• Description: Oryza sativa osa-miR5801c-5p mature miRNA
• Sequence: 62 - UUUCCGAUCGUUGGAUCUA - 80
• Evidence: experimental ; Illumina [1]

Mature osa-miR5801c-3p

• Accession: MIMAT0044647
• Description: Oryza sativa osa-miR5801c-3p mature miRNA
• Sequence: 118 - AAACGAUUUGGUACCGUGAGGU - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26083154
   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
   "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
   "RNA Biol (2015) 12:847-863