Stem-loop osa-MIR11343

Accession

MI0036493

Description

Oryza sativa osa-MIR11343 precursor miRNA

Sequence

256605 reads, 1070.0 reads per million, 142 experiments

uccgggcuauuaaauagcccuccgaaaucuugcuauuuagcaguauuaaacguagauuaccgacaaaacucauuccauaaccccugggcuauUUUGCGAGACGAAUCUAACGAGauauauuaauccaugauuuguugcagugaugcuacauugaucauucgcuaacuauggauuaauAUACCUCGUUAGAUUCGUCUCgcaaaauagccuagggguuauggaauggguuuugucaguaaucuacguuuaauacucuuagauagcaagauuuuggagagcuauuuaauagcccg
..((((((((((((((((.(((((((((((((((((((((.(((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((....(((((((((((.(......))))))).)).))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))).))))))))))))))))))))).))))))))))))))))

Structure

uc                c                     c                   c                                                     a              auuu   -  -      g ua 
  cgggcuauuaaauagc cuccgaaaucuugcuauuuag aguauuaaacguagauuac gacaaaacucauuccauaaccccugggcuauUUUGCGAGACGAAUCUAACGAG uauauuaauccaug    guu gc agugau c  c
  |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||| || |||||| |   
  gcccgauaauuuaucg gagguuuuagaacgauagauu ucauaauuugcaucuaaug cuguuuuggguaagguauuggggauccgauaaaacgCUCUGCUUAGAUUGCUC AUAuaauuagguau    caa cg uuacua g  a
--                a                     c                   a                                                     C              ----   u  c      - uu 

Annotation confidence Low

Genome context

11: 23289221-23289513 [-]

Mature osa-miR11343-5p

• Accession: MIMAT0044638
• Description: Oryza sativa osa-miR11343-5p mature miRNA
• Sequence: 93 - UUUGCGAGACGAAUCUAACGAG - 114
• Evidence: experimental ; Illumina [1]

Mature osa-miR11343-3p

• Accession: MIMAT0044639
• Description: Oryza sativa osa-miR11343-3p mature miRNA
• Sequence: 178 - AUACCUCGUUAGAUUCGUCUC - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26083154
   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
   "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
   "RNA Biol (2015) 12:847-863